Computomics: Discussions On Innovations To Drive Advanced Agriculture Solutions

In this Computomics Podcast episode, we launch the new “Make Sense of Science” explainer series, a format designed to break down complex scientific and technical topics into clear, accessible conversations.
In this first episode, Computomics machine learning scientist Alaukik Saxena introduces deep learning for genomic prediction in plant breeding. He explains how breeders use DNA marker data, field data, and environmental information to predict important plant traits such as yield, flowering time, or plant height, often before new plants are even grown. The episode also looks at why this is such a challenging task: breeding data is complex, environments differ greatly, and models can easily give overly optimistic results if they are not tested carefully.

Alaukik also explains the difference between classical statistical models, machine learning, and deep learning, and where each approach has its strengths. A key message of the episode is that good models depend on good data. Better phenotyping, smarter experimental design, and realistic validation are just as important as the algorithms themselves.

In this episode of the Computomics podcast, Dr. Rex Bernardo discusses the evolution of predictive plant breeding, from early molecular markers to today’s machine learning and AI approaches. He explains how these tools can support not only trait prediction, but also more complex breeding decisions, such as whether a line is likely to be selected or become a successful variety. The conversation also highlights community-focused work on leafy African vegetables in Minnesota and reflects on how plant breeding education must evolve to prepare future breeders for a more interdisciplinary, data-driven field.

In this episode, Darryn Keiller, Futurist, Entrepreneur, and founder of WayBeyond, discusses how digital agronomy helps growers make better decisions with data. He explains how farms can combine sensor, environmental, plant-response, and satellite data to improve daily decisions, predict risks, and raise yield and fruit quality. The conversation also covers the challenges of introducing new technology into agriculture, especially around trust and data ownership. Darryn argues that AI will not replace growers, but support them by closing knowledge gaps, and helping younger professionals adapt faster. It also enables farming systems to respond better to climate change, labor shortages, and growing production pressures.
More:
Darryn Keiller on LinkedIn
WayBeyond Homepage

Chris Kubica, Technical Account Manager at Computomics, discusses the importance of pangenomes for modern plant breeding. He explains that traditional genomics relies on a single reference genome, which cannot capture the full genetic diversity of a species. This is a big problem in complex plant genomes, where major parts of breeding-line diversity can be absent from the standard reference. A pangenome combines multiple assemblies to represent more of a species’ variation and to unlock hard-to-find trait signals. Chris introduces Pantograph, Computomics’ “omics browser”, which allows users to visualize and explore structural variation and integrate diverse omics data such as gene expression and variant information. Hear about current and planned capabilities in this informative and enjoyable episode!
 More:
Pantograph website
Chris Kubica on LinkedIn

This episode of the Computomics Podcast features Vanessa Prigge, potato breeder and R[&]D project manager at Saka Pflanzenzucht (Solana Group). She discusses her international research background, the unique challenges of potato breeding - such as vegetative propagation, complex genetics, and long breeding cycles - and the need for compromise-driven selection. Vanessa highlights two major projects: IPMorama, which promotes integrated pest management through resistant varieties, monitoring, and stakeholder collaboration, and POMORROW, which unlocks potato gene bank diversity for future-proof breeding. Together, these efforts aim to make potato breeding more sustainable, collaborative, and future-ready..
More information:
Solana Main Page
IPMorama Project Website
POMORROW project (German language)
Vanessa on LinkedIn